Package: mappestRisk 0.1.2

mappestRisk: Create Maps Forecasting Risk of Pest Occurrence
There are three different modules: (1) model fitting and selection using a set of the most commonly used equations describing developmental responses to temperature helped by already existing R packages ('rTPC') and nonlinear regression model functions from 'nls.multstart' (Padfield et al. 2021, <doi:10.1111/2041-210X.13585>), with visualization of model predictions to guide ecological criteria for model selection; (2) calculation of suitability thermal limits, which consist on a temperature interval delimiting the optimal performance zone or suitability; and (3) climatic data extraction and visualization inspired on previous research (Taylor et al. 2019, <doi:10.1111/1365-2664.13455>), with either exportable rasters, static map images or html, interactive maps.
Authors:
mappestRisk_0.1.2.tar.gz
mappestRisk_0.1.2.zip(r-4.7)mappestRisk_0.1.2.zip(r-4.6)mappestRisk_0.1.2.zip(r-4.5)
mappestRisk_0.1.2.tgz(r-4.6-any)mappestRisk_0.1.2.tgz(r-4.5-any)
mappestRisk_0.1.2.tar.gz(r-4.7-any)mappestRisk_0.1.2.tar.gz(r-4.6-any)
mappestRisk_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mappestRisk/json (API)
NEWS
| # Install 'mappestRisk' in R: |
| install.packages('mappestRisk', repos = c('https://ecologyr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ecologyr/mappestrisk/issues
Pkgdown/docs site:https://ecologyr.github.io
- aphid - Brachycaudus schwartzi whole life cycle development rate across temperatures
- available_models - Available Models Table
- country_names - Country names
Last updated from:8d915c66ac. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 194 | ||
| source / vignettes | OK | 219 | ||
| linux-release-x86_64 | OK | 197 | ||
| macos-release-arm64 | OK | 123 | ||
| macos-oldrel-arm64 | OK | 92 | ||
| windows-devel | OK | 133 | ||
| windows-release | OK | 140 | ||
| windows-oldrel | OK | 128 | ||
| wasm-release | OK | 139 |
Exports:fit_devmodelsget_fitted_modelmap_riskplot_devmodelsplot_uncertaintiespredict_curvestherm_suit_bounds
Dependencies:clicpp11crayondplyrfarvergenericsgeodataggplot2gluegtablehmsisobandkhromalabelinglhslifecyclemagrittrminpack.lmnls.multstartpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRColorBrewerRcpprlangrTPCS7scalesstringistringrterratibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Brachycaudus schwartzi whole life cycle development rate across temperatures | aphid |
| Available Models Table | available_models |
| Country names | country_names |
| Fit Thermal Performance Curves | fit_devmodels |
| Get fitted model object | get_fitted_model |
| Map pest risk | map_risk |
| Plot fitted thermal performance curves | plot_devmodels |
| Draw bootstrapped Thermal Performance Curves (TPCs) to visualize uncertainty in parameter estimation of TPC fitting | plot_uncertainties |
| Propagate parameter uncertainty of TPC fits using bootstrap with residual resampling | predict_curves |
| Determine Thermal Boundaries for Optimal Performance Level | therm_suit_bounds |
