Package: RecruitNetP 0.0.0.9000

Francisco Rodriguez-Sanchez

RecruitNetP: Analysis of Recruitment Networks

Analyze recruitment networks and patterns of plant-plant interactions.

Authors:Alicia Montesinos-Navarro [aut, cph], José Luis Garrido [aut, cph], Miguel Verdú [aut, cph], Julio M. Alcántara [aut, cph], Verónica Cruz-Alonso [ctb], Francisco Rodriguez-Sanchez [aut, cre, cph]

RecruitNetP_0.0.0.9000.tar.gz
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RecruitNetP_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RecruitNetP/json (API)

# Install 'RecruitNetP' in R:
install.packages('RecruitNetP', repos = c('https://ecologyr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ecologyr/recruitnetp/issues

Pkgdown/docs site:https://ecologyr.github.io

Datasets:

On CRAN:

Conda:

3.00 score 3 scripts 25 exports 71 dependencies

Last updated from:2ef083fa14. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR179
source / vignettesOK222
linux-release-x86_64ERROR162
macos-release-arm64ERROR99
macos-oldrel-arm64ERROR119
windows-develERROR106
windows-releaseERROR110
windows-oldrelERROR104
wasm-releaseOK153

Exports:accum_curveassocindexcanopy_service_testcheck_covercheck_interactionscomm_subsetcomm_to_RNfuntopol_recint_significancelink_completenessload_coverload_interactionsnode_degreesnode_topolrecruitment_niche_testremove_no_coverRN_dimsRN_heatmapRN_to_matrixtopol_depretopol_facvisu_funtopol_recvisu_netvisu_topol_deprevisu_topol_fac

Dependencies:base64encbipartitebslibcachemcliclustercodacorpcorcpp11digestdotCall64evaluateextremevaluesfarverfastmapfieldsfontawesomefsggplot2gluegtablehighrhtmltoolshtmlwidgetsigraphiNEXTisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrmapsMASSMatrixmemoisemgcvmimenetworknlmepermutepillarpkgconfigplyrR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownS7sassscalessnaspamstatnet.commonstringistringrtibbletinytexutf8vctrsveganviridisLitevisNetworkwithrxfunyaml

Readme and manuals

Help Manual

Help pageTopics
Accumulation curve of network dimensionsaccum_curve
Amoladeras cover dataAmoladeras_cover
Amoladeras interaction dataAmoladeras_int
Calculate different association indices considering different interaction types.associndex
Identifies whether a species acts as depressing, enhancing or neutralcanopy_service_test
Check cover data formatcheck_cover
Check interaction data formatcheck_interactions
Subset data from one study sitecomm_subset
Combine cover data with interaction data.comm_to_RN
Download RecruitNet database from Zenododownload_RN
Species functional role in the general recruitment networkfuntopol_rec
Statistical significance of interactionsint_significance
Estimates the completeness and coverage of the sampled interactionslink_completeness
Load canopy cover data from RecruitNet databaseload_cover
Load interaction data from RecruitNet databaseload_interactions
Calculate width of canopy service and recruitment nichesnode_degrees
calculates eigenvector centrality and the two measures of extended niche.node_topol
Recruitment niche: community-level effects on species recruitmentrecruitment_niche_test
Remove species with no cover dataremove_no_cover
Basic network dimensionsRN_dims
Visualize a heatmap of the interactions matrix.RN_heatmap
Convert field data to matrix formatRN_to_matrix
Test datatest_data
Summary and node-based information of species in loops and simple pathstopol_depre
summary and node-based information of species in loops and simple pathstopol_fac
visualize the functional topology of general recruitment networksvisu_funtopol_rec
Graph of nodes and interactionsvisu_net
Allow the visualization of intransitivity loops of recruitment depressionvisu_topol_depre
Allow the visualization of reciprocal facilitationvisu_topol_fac